// Get the width and heigh of the SVG element.
var width = +document.getElementById('svg').clientWidth,
  height = +document.getElementById('svg').clientHeight;

var svg = d3.select('svg')
  .call(d3.zoom().scaleExtent([0.0001, 1000000]).on('zoom', function () {
    svg.attr('transform', d3.event.transform);
  }))
  .append('g');

var div = d3.select('body').append('div')
  .attr('class', 'tooltip')
  .style('opacity', 0);

var brush = d3.brush()
  .extent([[-9999999, -9999999], [9999999, 9999999]])
  .on('end', brushEnded);

svg.append('g')
  .attr('class', 'brush')
  .call(brush);

// var intercom = Intercom.getInstance();

// intercom.on("select", unSelectNodes);

var nodes, // as in Data points
  node, // as in SVG object that have all small circles on screen
  props,
  norm,
  p1 = 0,
  p2 = 0,
  size,
  distanceFunction,
  simulation,
  velocities = [],
  rendering = true, // Rendering during the execution.
  forceName = 'forces',
  springForce = false,
  tooltipWidth = 0,
  fileName = '',
  selectedData,
  clickedIndex = -1,
  paused = false,
  alreadyRanIterations,
  tweakedVerOfLink,
  manualStop = false;

// Default parameters
var MULTIPLIER = 50,
  PERPLEXITY = 30,
  LEARNING_RATE = 10,
  NEIGHBOUR_SIZE = 10,
  SAMPLE_SIZE = 10,
  PIVOTS = false,
  NUM_PIVOTS = 3,
  ITERATIONS = 300,
  FULL_ITERATIONS = 20,
  NODE_SIZE = 10,
  COLOR_ATTRIBUTE = '',
  FULL_NEIGHBOUR_SIZE = 10,
  FULL_SAMPLE_SIZE = 10,
  INTERP_ENDING_ITS = 20;

// Create a color scheme for a range of numbers.
var color = d3.scaleOrdinal(d3.schemeCategory10);

$(document).ready(function () {
  distanceFunction = calculateDistance;
  d3.select('#startSimulation').on('click', startHybridSimulation);
  $('#HLParameters').show();
});

/**
 * Parse the data from the provided csv file using Papa Parse library
 * @param  {file} evt - csv file.
 */
function parseFile (evt) {
  // Clear the previous nodes
  d3.selectAll('.nodes').remove();
  springForce = false;

  fileName = evt.target.files[0].name;
  Papa.parse(evt.target.files[0], {
    header: true,
    dynamicTyping: true,
    skipEmptyLines: true,
    complete: function (results) {
      processData(results.data, results.error);
    }
  });
}

/**
 * Process the data and pass it into D3 force simulation.
 * @param  {array} data
 * @param  {object} error
 */
function processData (data, error) {
  if (error) throw error.message;

  nodes = data;
  size = nodes.length;
  simulation = d3.forceSimulation();

  // Calculate normalization parameters for distance fns
  norm = calculateNormalization(nodes);
  props = Object.keys(nodes[0]); // Properties to consider by distance fn

  COLOR_ATTRIBUTE = props[props.length - 1];

  var opts = document.getElementById('color_attr').options;

  props.forEach(function (d) {
    opts.add(new Option(d, d, (d === COLOR_ATTRIBUTE)));
  });
  opts.selectedIndex = props.length - 1;
  // props.pop(); //Hide Iris index / last column from the distance function

  // Put the nodes at (0,0)
  nodes.forEach(function (d) {
    d.x = 0;
    d.y = 0;
  });

  addNodesToDOM(nodes);

  // Pass the nodes to the D3 force simulation.
  simulation
    .nodes(nodes)
    .stop();

  ticked();
};

function addNodesToDOM (data) {
  node = svg.append('g')
    .attr('class', 'nodes')
    .selectAll('circle')
    .data(data)
    .enter().append('circle')
    .attr('r', NODE_SIZE)
    .attr('transform', 'translate(' + width / 2 + ',' + height / 2 + ')')
    // Color code the data points by a property (for Poker Hands,
    // it is a CLASS property).
    .attr('fill', function (d) {
      return color(d[COLOR_ATTRIBUTE]);
    })
    .on('mouseover', function (d) {
      div.transition()
        .duration(200)
        .style('opacity', 0.9);
      div.html(formatTooltip(d))
        .style('left', (d3.event.pageX) + 'px')
        .style('top', (d3.event.pageY - (15 * props.length)) + 'px')
        .style('width', (6 * tooltipWidth) + 'px')
        .style('height', (14 * props.length) + 'px');
      highlightOnHover(d[COLOR_ATTRIBUTE]);
    })
    .on('mouseout', function (d) {
      div.transition()
        .duration(500)
        .style('opacity', 0);
      node.attr('opacity', 1);
    })
    .on('click', function (d) {
      console.log('click', clickedIndex);
      if (clickedIndex !== d.index) {
        if (springForce) {
          highlightNeighbours(Array.from(simulation.force(forceName).nodeNeighbours(d.index).keys()));
          clickedIndex = d.index;
        }
      } else {
        node.attr('r', NODE_SIZE).attr('stroke-width', 0);
        clickedIndex = -1;
      }
    });
  if (selectedData) { unSelectNodes(selectedData); }
}

function ticked () {
  alreadyRanIterations++;
  // If rendering is selected, then draw at every iteration.
  if (rendering === true) {
    node // Each sub-circle in the SVG, update cx and cy
      .attr('cx', function (d) {
        return d.x * MULTIPLIER;
      })
      .attr('cy', function (d) {
        return d.y * MULTIPLIER;
      });
  }
  // Legacy: Emit the distribution data to allow the drawing of the bar graph
  // if (springForce) {
  //  intercom.emit("passedData", simulation.force(forceName).distributionData());
  // }
  if (manualStop && alreadyRanIterations == ITERATIONS) {
    ended();
  }
}

function ended () {
  simulation.stop();
  simulation.force(forceName, null);
  if (rendering !== true) { // Never drawn anything before? Now it's time.
    node
      .attr('cx', function (d) {
        return d.x * MULTIPLIER;
      })
      .attr('cy', function (d) {
        return d.y * MULTIPLIER;
      });
  }

  if (p1 !== 0) {
    // Performance time measurement
    p2 = performance.now();
    console.log('Execution time: ' + (p2 - p1));
    p1 = 0;
    p2 = 0;
  }
}

function brushEnded () {
  var s = d3.event.selection,
    results = [];

  if (s) {
    var x0 = s[0][0] - width / 2,
      y0 = s[0][1] - height / 2,
      x1 = s[1][0] - width / 2,
      y1 = s[1][1] - height / 2;

    if (nodes) {
      var sel = node.filter(function (d) {
        if (d.x > x0 && d.x < x1 && d.y > y0 && d.y < y1) {
          return true;
        }
        return false;
      }).data();

      results = sel.map(function (a) { return a.index; });
    }

    // intercom.emit("select", { name: fileName, indices: results });

    d3.select('.brush').call(brush.move, null);
  }
}

/**
 * Format the tooltip for the data
 * @param {*} node
 */
function formatTooltip (node) {
  var textString = '',
    temp = '';

  tooltipWidth = 0;
  props.forEach(function (element) {
    temp = element + ': ' + node[element] + '<br/>';
    textString += temp;
    if (temp.length > tooltipWidth) {
      tooltipWidth = temp.length;
    }
  });
  return textString;
}

/**
 * Halt the execution.
 */
function stopSimulation () {
  simulation.stop();
  if (typeof hybridSimulation !== 'undefined') {
    hybridSimulation.stop();
  }
}

/**
 * Calculate the average values of the array.
 * @param  {array} array
 * @return {number}  the mean of the array.
 */
function getAverage (array) {
  console.log('getAverage', array);
  var total = 0;
  for (var i = 0; i < array.length; i++) {
    total += array[i];
  }
  return total / array.length;
}

/**
 * Deselect the nodes to match the selection from other window.
 * @param {*} data
 */
function unSelectNodes (data) {
  selectedData = data;
  if (fileName === data.name && nodes) {
    node
      .classed('notSelected', function (d) {
        if (data.indices.indexOf(d.index) < 0) {
          return true;
        }
        return false;
      });
  }
}

/**
 * Highlight the neighbours for neighbour and sampling algorithm
 * @param {*} indices
 */
function highlightNeighbours (indices) {
  node
    .attr('r', function (d) {
      if (indices.indexOf(d.index) >= 0) {
        return NODE_SIZE * 2;
      }
      return NODE_SIZE;
    })
    .attr('stroke-width', function (d) {
      if (indices.indexOf(d.index) >= 0) {
        return NODE_SIZE * 0.2 + 'px';
      }
      return '0px';
    })
    .attr('stroke', 'white');
}

/**
 * Highlight all the nodes with the same class on hover
 * @param {*} highlighValue
 */
function highlightOnHover (highlighValue) {
  node.attr('opacity', function (d) {
    return (highlighValue === d[COLOR_ATTRIBUTE]) ? 1 : 0.3;
  });
}

/**
 * Color the nodes according to given attribute.
 */
function colorToAttribute () {
  node.attr('fill', function (d) {
    return color(d[COLOR_ATTRIBUTE]);
  });
}

/**
 * Update the distance range.

function updateDistanceRange() {
  if (springForce) {
    simulation.force(forceName).distanceRange(SELECTED_DISTANCE);
  }
}

/**
 * Implemented pause/resume functionality
 */
function pauseUnPause () {
  if (simulation) {
    if (paused) {
      simulation.force(forceName);
      simulation.restart();
      d3.select('#pauseButton').text('Pause');
      paused = false;
    } else {
      simulation.stop();
      d3.select('#pauseButton').text('Resume');
      paused = true;
    }
  }
}

/**
 * Average distances for each node.
 * @param {*} dataNodes
 * @param {*} properties
 * @param {*} normalization

function calculateAverageDistance(dataNodes, properties, normalization) {
  var sum = 0,
    n = nodes.length;

  for (var i = 0; i < n; i++) {
    var sumNode = 0;
    for (var j = 0; j < n; j++) {
      if (i !== j) {
        sumNode += distanceFunction(nodes[i], nodes[j], properties, normalization);
        // console.log(sumNode);
      }
    }
    sum += sumNode / (n - 1);
  }

  return sum / n;
} */