22 Commits

Author SHA1 Message Date
Pitchaya Boonsarngsuk
fa5d34f96e แก้ เผลอคอมเมนต์เกิน 2018-03-22 16:53:39 +00:00
Pitchaya Boonsarngsuk
7c2900653e แก้ coding style ภาค 12 2018-03-22 16:47:10 +00:00
Pitchaya Boonsarngsuk
d59e4066d3 แก้ coding style ภาค 11 2018-03-22 16:44:57 +00:00
Pitchaya Boonsarngsuk
7b322b3ea8 แก้ตัวปิดบรรทัด 2018-03-22 16:42:28 +00:00
Pitchaya Boonsarngsuk
b2f5993513 แก้ coding style ภาค 9 (reverted from commit 400eab7e80) 2018-03-22 16:40:35 +00:00
Pitchaya Boonsarngsuk
cd0f3687cb แก้ coding style ภาค 10 2018-03-22 16:40:27 +00:00
Pitchaya Boonsarngsuk
400eab7e80 แก้ coding style ภาค 9 2018-03-22 16:40:14 +00:00
Pitchaya Boonsarngsuk
294cc7724e เพิ่ม script eslint fix 2018-03-22 16:36:27 +00:00
Pitchaya Boonsarngsuk
0d1fa385f8 แก้ coding style ภาค 8 2018-03-22 16:35:48 +00:00
Pitchaya Boonsarngsuk
93af0e646a แก้ coding style ภาค 7 2018-03-22 16:35:00 +00:00
Pitchaya Boonsarngsuk
684878b1fd แก้ coding style ภาค 6 2018-03-22 16:30:41 +00:00
Pitchaya Boonsarngsuk
21ee710468 แก้ coding style ภาค 5 2018-03-22 16:29:10 +00:00
Pitchaya Boonsarngsuk
8e34697d89 แก้ coding style ภาค 4 2018-03-22 16:22:43 +00:00
Pitchaya Boonsarngsuk
f3a6656c8f แก้ coding style ภาค 3 2018-03-22 16:17:48 +00:00
Pitchaya Boonsarngsuk
0cdd927444 แก้ coding style ภาค 2 2018-03-22 16:12:25 +00:00
Pitchaya Boonsarngsuk
2256af7448 แก้ coding style 2018-03-22 16:02:45 +00:00
Pitchaya Boonsarngsuk
b601af68b4 แก้ชื่อตัวแปล 2018-03-22 15:49:22 +00:00
Pitchaya Boonsarngsuk
f316d2755a แก้วงเล็บ 2018-03-22 15:48:30 +00:00
Pitchaya Boonsarngsuk
d31951fa85 Eslint allow console 2018-03-22 15:41:44 +00:00
Pitchaya Boonsarngsuk
7c1886dcc6 Eslint ใช้ ES6 2018-03-22 15:33:16 +00:00
Pitchaya Boonsarngsuk
66da3eb15b Add eslint run script 2018-03-22 15:32:09 +00:00
Pitchaya Boonsarngsuk
6a46342afd เพิ่ม eslint 2018-03-22 15:24:45 +00:00
31 changed files with 1502 additions and 1500 deletions

19
.eslintrc Normal file
View File

@@ -0,0 +1,19 @@
parserOptions:
sourceType: module
extends:
"standard"
rules:
no-cond-assign: 0
no-console: 0
semi:
- error
- always
no-return-assign: 0
one-var: 0
env:
es6: true
globals:
console: false
performance: false

View File

@@ -2,9 +2,9 @@
* Initialize the hybrid layout algorithm and start simulation. * Initialize the hybrid layout algorithm and start simulation.
*/ */
function startHybridSimulation () { function startHybridSimulation () {
console.log("startHybridSimulation"); console.log('startHybridSimulation');
springForce = false; springForce = false;
d3.selectAll(".nodes").remove(); d3.selectAll('.nodes').remove();
manualStop = false; manualStop = false;
simulation.stop(); simulation.stop();
p1 = performance.now(); p1 = performance.now();
@@ -17,13 +17,13 @@ function startHybridSimulation() {
.neighbourSize(NEIGHBOUR_SIZE) .neighbourSize(NEIGHBOUR_SIZE)
.sampleSize(SAMPLE_SIZE) .sampleSize(SAMPLE_SIZE)
.stableVelocity(0) // Change here .stableVelocity(0) // Change here
.distance(distance) .distance(distance);
let forceFull = d3.forceNeighbourSampling() let forceFull = d3.forceNeighbourSampling()
.neighbourSize(FULL_NEIGHBOUR_SIZE) .neighbourSize(FULL_NEIGHBOUR_SIZE)
.sampleSize(FULL_SAMPLE_SIZE) .sampleSize(FULL_SAMPLE_SIZE)
.stableVelocity(0) // Change here .stableVelocity(0) // Change here
.distance(distance) .distance(distance);
let hybridSimulation = d3.hybridSimulation(simulation, forceSample, forceFull) let hybridSimulation = d3.hybridSimulation(simulation, forceSample, forceFull)
.sampleIterations(ITERATIONS) .sampleIterations(ITERATIONS)
@@ -31,10 +31,10 @@ function startHybridSimulation() {
.numPivots(PIVOTS ? NUM_PIVOTS : -1) .numPivots(PIVOTS ? NUM_PIVOTS : -1)
.interpFindTuneIts(INTERP_ENDING_ITS) .interpFindTuneIts(INTERP_ENDING_ITS)
.interpDistanceFn(distance) .interpDistanceFn(distance)
.on("sampleTick", ticked) .on('sampleTick', ticked)
.on("fullTick", ticked) .on('fullTick', ticked)
.on("startInterp", startedFull) .on('startInterp', startedFull)
.on("end", ended); .on('end', ended);
let sample = hybridSimulation.subSet(); let sample = hybridSimulation.subSet();
addNodesToDOM(sample); addNodesToDOM(sample);
@@ -42,8 +42,8 @@ function startHybridSimulation() {
hybridSimulation.restart(); hybridSimulation.restart();
function startedFull () { function startedFull () {
console.log("startedFull"); console.log('startedFull');
d3.selectAll(".nodes").remove(); d3.selectAll('.nodes').remove();
addNodesToDOM(nodes); addNodesToDOM(nodes);
} }
} }

View File

@@ -2,7 +2,7 @@
* Initialize the link force algorithm and start simulation. * Initialize the link force algorithm and start simulation.
*/ */
function startLinkSimulation () { function startLinkSimulation () {
console.log("startLinkSimulation") console.log('startLinkSimulation');
springForce = false; springForce = false;
alreadyRanIterations = 0; alreadyRanIterations = 0;
manualStop = true; manualStop = true;
@@ -17,13 +17,12 @@ function startLinkSimulation() {
}) })
.stableVelocity(0) // Change here .stableVelocity(0) // Change here
.onStableVelo(ended); .onStableVelo(ended);
} } else {
else {
for (i = nodes.length - 1; i >= 1; i--) { for (i = nodes.length - 1; i >= 1; i--) {
for (j = i - 1; j >= 0; j--) { for (j = i - 1; j >= 0; j--) {
links.push({ links.push({
source: nodes[i], source: nodes[i],
target: nodes[j], target: nodes[j]
}); });
} }
} }
@@ -51,8 +50,8 @@ function startLinkSimulation() {
simulation simulation
.alphaDecay(0) .alphaDecay(0)
.alpha(1) .alpha(1)
.on("tick", ticked) .on('tick', ticked)
.on("end", ended) .on('end', ended)
// .velocityDecay(0.8) // .velocityDecay(0.8)
.force(forceName, force) .force(forceName, force)
.restart(); .restart();

View File

@@ -2,7 +2,7 @@
* Initialize the Chalmers' 1996 algorithm and start simulation. * Initialize the Chalmers' 1996 algorithm and start simulation.
*/ */
function startNeighbourSamplingSimulation () { function startNeighbourSamplingSimulation () {
console.log("startNeighbourSamplingSimulation"); console.log('startNeighbourSamplingSimulation');
// springForce = true; // springForce = true;
alreadyRanIterations = 0; alreadyRanIterations = 0;
manualStop = true; manualStop = true;
@@ -21,8 +21,8 @@ function startNeighbourSamplingSimulation() {
simulation simulation
.alphaDecay(0) .alphaDecay(0)
.alpha(1) .alpha(1)
.on("tick", ticked) .on('tick', ticked)
.on("end", ended) .on('end', ended)
.force(forceName, force); .force(forceName, force);
// Restart the simulation. // Restart the simulation.
simulation.restart(); simulation.restart();

View File

@@ -26,15 +26,15 @@ function starttSNE() {
* Initialize the Barnes-Hut algorithm and start simulation. * Initialize the Barnes-Hut algorithm and start simulation.
*/ */
function startBarnesHutSimulation () { function startBarnesHutSimulation () {
console.log("startBarnesHutSimulation") console.log('startBarnesHutSimulation');
alreadyRanIterations = 0; alreadyRanIterations = 0;
manualStop = false; manualStop = false;
springForce = false; springForce = false;
p1 = performance.now(); p1 = performance.now();
simulation.alphaDecay(1 - Math.pow(0.001, 1 / ITERATIONS)) simulation.alphaDecay(1 - Math.pow(0.001, 1 / ITERATIONS))
.on("tick", ticked) .on('tick', ticked)
.on("end", ended) .on('end', ended)
.force(forceName, d3.forceBarnesHut() .force(forceName, d3.forceBarnesHut()
// The distance function that will be used to calculate distances // The distance function that will be used to calculate distances
// between nodes. // between nodes.

View File

@@ -12,7 +12,7 @@ function calculateCosineSimilarity(source, target, properties, normArgs) {
// Iterate through every column of data // Iterate through every column of data
for (var i = 0; i < properties.length; i++) { for (var i = 0; i < properties.length; i++) {
property = properties[i]; property = properties[i];
if (property.toLowerCase() !== "class" && property.toLowerCase() !== "app" && property.toLowerCase() !== "user" && property.toLowerCase() !== "weekday") { if (property.toLowerCase() !== 'class' && property.toLowerCase() !== 'app' && property.toLowerCase() !== 'user' && property.toLowerCase() !== 'weekday') {
var s = source[property], var s = source[property],
t = target[property]; t = target[property];

View File

@@ -12,7 +12,7 @@ function calculateDiceDissimilarity(source, target, properties, normArgs) {
// Iterate through every column of data // Iterate through every column of data
for (var i = 0; i < properties.length; i++) { for (var i = 0; i < properties.length; i++) {
property = properties[i]; property = properties[i];
if (property.toLowerCase() !== "class" && property.toLowerCase() !== "app" && property.toLowerCase() !== "user" && property.toLowerCase() !== "weekday") { if (property.toLowerCase() !== 'class' && property.toLowerCase() !== 'app' && property.toLowerCase() !== 'user' && property.toLowerCase() !== 'weekday') {
var s = source[property], var s = source[property],
t = target[property]; t = target[property];

View File

@@ -19,8 +19,8 @@ function calculateDistance(source, target, properties, normArgs) {
// Iterate through every column of data // Iterate through every column of data
for (var i = 0; i < properties.length; i++) { for (var i = 0; i < properties.length; i++) {
property = properties[i]; property = properties[i];
if (source.hasOwnProperty(property) && target.hasOwnProperty(property) if (source.hasOwnProperty(property) && target.hasOwnProperty(property) &&
&& property.toLowerCase() !== "index" && property.toLowerCase() !== "type") { property.toLowerCase() !== 'index' && property.toLowerCase() !== 'type') {
var s = source[property], var s = source[property],
t = target[property]; t = target[property];
@@ -42,9 +42,8 @@ function calculateDistance(source, target, properties, normArgs) {
// Comparing Dates // Comparing Dates
var parsedDateS = Date.parse(s); var parsedDateS = Date.parse(s);
var parsedDateT = Date.parse(t); var parsedDateT = Date.parse(t);
if (isNaN(s) && !isNaN(parsedDateS) if (isNaN(s) && !isNaN(parsedDateS) &&
&& isNaN(t) && !isNaN(parsedDateT)) { isNaN(t) && !isNaN(parsedDateT)) {
val1 = parsedDateS.valueOf(), val1 = parsedDateS.valueOf(),
val2 = parsedDateT.valueOf(); val2 = parsedDateT.valueOf();

View File

@@ -10,7 +10,7 @@ function calculateDistancePoker(source, target) {
var sumDiff = 0.0, var sumDiff = 0.0,
ordDiff = 1.0, ordDiff = 1.0,
ORD_FACTOR = 1.5, ORD_FACTOR = 1.5,
cards = ["C1", "C2", "C3", "C4", "C5"], cards = ['C1', 'C2', 'C3', 'C4', 'C5'],
cols = 0; cols = 0;
// Iterate through cards // Iterate through cards
@@ -26,13 +26,13 @@ function calculateDistancePoker(source, target) {
// Class of poker hands describes the similarities the best // Class of poker hands describes the similarities the best
// so give it more priority than checking the differences between cards. // so give it more priority than checking the differences between cards.
if (source.hasOwnProperty("CLASS") && target.hasOwnProperty("CLASS")) { if (source.hasOwnProperty('CLASS') && target.hasOwnProperty('CLASS')) {
var s = parseInt(source["CLASS"]), var s = parseInt(source['CLASS']),
t = parseInt(target["CLASS"]); t = parseInt(target['CLASS']);
// If classes differ, then scale them by a factor. // If classes differ, then scale them by a factor.
if (s !== t) { if (s !== t) {
ordDiff *= (ORD_FACTOR * (Math.abs(s-t))) ordDiff *= (ORD_FACTOR * (Math.abs(s - t)));
} }
} }

View File

@@ -12,7 +12,7 @@ function calculateEuclideanDistance(source, target, properties, normArgs) {
// Iterate through every column of data // Iterate through every column of data
for (var i = 0; i < properties.length; i++) { for (var i = 0; i < properties.length; i++) {
property = properties[i]; property = properties[i];
if (property.toLowerCase() !== "class" && property.toLowerCase() !== "app" && property.toLowerCase() !== "user" && property.toLowerCase() !== "weekday" && property.toLowerCase() !== "type") { if (property.toLowerCase() !== 'class' && property.toLowerCase() !== 'app' && property.toLowerCase() !== 'user' && property.toLowerCase() !== 'weekday' && property.toLowerCase() !== 'type') {
var s = source[property], var s = source[property],
t = target[property]; t = target[property];

View File

@@ -15,7 +15,7 @@ function calculateEuclideanDistanceTSNE(source, target, properties, normArgs) {
for (var i = 0; i < properties.length; i++) { for (var i = 0; i < properties.length; i++) {
property = properties[i]; property = properties[i];
if (source.hasOwnProperty(property) && target.hasOwnProperty(property) && if (source.hasOwnProperty(property) && target.hasOwnProperty(property) &&
property.toLowerCase() !== "class") { property.toLowerCase() !== 'class') {
var s = source[property], var s = source[property],
t = target[property]; t = target[property];

View File

@@ -12,7 +12,7 @@ function calculateJaccardDissimilarity(source, target, properties, normArgs) {
// Iterate through every column of data // Iterate through every column of data
for (var i = 0; i < properties.length; i++) { for (var i = 0; i < properties.length; i++) {
property = properties[i]; property = properties[i];
if (property.toLowerCase() !== "class" && property.toLowerCase() !== "app" && property.toLowerCase() !== "user" && property.toLowerCase() !== "weekday") { if (property.toLowerCase() !== 'class' && property.toLowerCase() !== 'app' && property.toLowerCase() !== 'user' && property.toLowerCase() !== 'weekday') {
var s = source[property], var s = source[property],
t = target[property]; t = target[property];

View File

@@ -13,7 +13,7 @@ function calculateManhattanDistance(source, target, properties, normArgs) {
// Iterate through every column of data // Iterate through every column of data
for (var i = 0; i < properties.length; i++) { for (var i = 0; i < properties.length; i++) {
property = properties[i]; property = properties[i];
if (property.toLowerCase() !== "class" && property.toLowerCase() !== "app" && property.toLowerCase() !== "user" && property.toLowerCase() !== "weekday") { if (property.toLowerCase() !== 'class' && property.toLowerCase() !== 'app' && property.toLowerCase() !== 'user' && property.toLowerCase() !== 'weekday') {
var s = source[property], var s = source[property],
t = target[property]; t = target[property];

View File

@@ -23,10 +23,8 @@ function calculateNormalization(nodes) {
}; };
} }
function standardDevation (nodes, properties, avg) { function standardDevation (nodes, properties, avg) {
var stDev = new Array(properties.length).fill(0);
var stDev = new Array(properties.length).fill(0)
for (var i = 0; i < properties.length; i++) { for (var i = 0; i < properties.length; i++) {
var sum = 0; var sum = 0;
@@ -52,7 +50,6 @@ function standardDevation(nodes, properties, avg) {
} }
return stDev; return stDev;
} }
// Calculate the sum of values and the squared sum // Calculate the sum of values and the squared sum

View File

@@ -2,22 +2,22 @@
var width = +document.getElementById('svg').clientWidth, var width = +document.getElementById('svg').clientWidth,
height = +document.getElementById('svg').clientHeight; height = +document.getElementById('svg').clientHeight;
var svg = d3.select("svg") var svg = d3.select('svg')
.call(d3.zoom().scaleExtent([0.0001, 1000000]).on("zoom", function () { .call(d3.zoom().scaleExtent([0.0001, 1000000]).on('zoom', function () {
svg.attr("transform", d3.event.transform); svg.attr('transform', d3.event.transform);
})) }))
.append("g"); .append('g');
var div = d3.select("body").append("div") var div = d3.select('body').append('div')
.attr("class", "tooltip") .attr('class', 'tooltip')
.style("opacity", 0); .style('opacity', 0);
var brush = d3.brush() var brush = d3.brush()
.extent([[-9999999, -9999999], [9999999, 9999999]]) .extent([[-9999999, -9999999], [9999999, 9999999]])
.on("end", brushEnded); .on('end', brushEnded);
svg.append("g") svg.append('g')
.attr("class", "brush") .attr('class', 'brush')
.call(brush); .call(brush);
// var intercom = Intercom.getInstance(); // var intercom = Intercom.getInstance();
@@ -35,10 +35,10 @@ var nodes, // as in Data points
simulation, simulation,
velocities = [], velocities = [],
rendering = true, // Rendering during the execution. rendering = true, // Rendering during the execution.
forceName = "forces", forceName = 'forces',
springForce = false, springForce = false,
tooltipWidth = 0, tooltipWidth = 0,
fileName = "", fileName = '',
selectedData, selectedData,
clickedIndex = -1, clickedIndex = -1,
paused = false, paused = false,
@@ -57,7 +57,7 @@ var MULTIPLIER = 50,
ITERATIONS = 300, ITERATIONS = 300,
FULL_ITERATIONS = 20, FULL_ITERATIONS = 20,
NODE_SIZE = 10, NODE_SIZE = 10,
COLOR_ATTRIBUTE = "", COLOR_ATTRIBUTE = '',
FULL_NEIGHBOUR_SIZE = 10, FULL_NEIGHBOUR_SIZE = 10,
FULL_SAMPLE_SIZE = 10, FULL_SAMPLE_SIZE = 10,
INTERP_ENDING_ITS = 20; INTERP_ENDING_ITS = 20;
@@ -68,7 +68,7 @@ var color = d3.scaleOrdinal(d3.schemeCategory10);
$(document).ready(function () { $(document).ready(function () {
distanceFunction = calculateDistance; distanceFunction = calculateDistance;
d3.select('#startSimulation').on('click', startHybridSimulation); d3.select('#startSimulation').on('click', startHybridSimulation);
$("#HLParameters").show(); $('#HLParameters').show();
}); });
/** /**
@@ -77,7 +77,7 @@ $(document).ready(function() {
*/ */
function parseFile (evt) { function parseFile (evt) {
// Clear the previous nodes // Clear the previous nodes
d3.selectAll(".nodes").remove(); d3.selectAll('.nodes').remove();
springForce = false; springForce = false;
fileName = evt.target.files[0].name; fileName = evt.target.files[0].name;
@@ -112,12 +112,11 @@ function processData(data, error) {
var opts = document.getElementById('color_attr').options; var opts = document.getElementById('color_attr').options;
props.forEach(function (d) { props.forEach(function (d) {
opts.add(new Option(d, d, (d === COLOR_ATTRIBUTE) ? true : false)); opts.add(new Option(d, d, (d === COLOR_ATTRIBUTE)));
}); });
opts.selectedIndex = props.length - 1; opts.selectedIndex = props.length - 1;
// props.pop(); //Hide Iris index / last column from the distance function // props.pop(); //Hide Iris index / last column from the distance function
// Put the nodes at (0,0) // Put the nodes at (0,0)
nodes.forEach(function (d) { nodes.forEach(function (d) {
d.x = 0; d.x = 0;
@@ -135,49 +134,48 @@ function processData(data, error) {
}; };
function addNodesToDOM (data) { function addNodesToDOM (data) {
node = svg.append("g") node = svg.append('g')
.attr("class", "nodes") .attr('class', 'nodes')
.selectAll("circle") .selectAll('circle')
.data(data) .data(data)
.enter().append("circle") .enter().append('circle')
.attr("r", NODE_SIZE) .attr('r', NODE_SIZE)
.attr("transform", "translate(" + width / 2 + "," + height / 2 + ")") .attr('transform', 'translate(' + width / 2 + ',' + height / 2 + ')')
// Color code the data points by a property (for Poker Hands, // Color code the data points by a property (for Poker Hands,
// it is a CLASS property). // it is a CLASS property).
.attr("fill", function (d) { .attr('fill', function (d) {
return color(d[COLOR_ATTRIBUTE]); return color(d[COLOR_ATTRIBUTE]);
}) })
.on("mouseover", function (d) { .on('mouseover', function (d) {
div.transition() div.transition()
.duration(200) .duration(200)
.style("opacity", .9); .style('opacity', 0.9);
div.html(formatTooltip(d)) div.html(formatTooltip(d))
.style("left", (d3.event.pageX) + "px") .style('left', (d3.event.pageX) + 'px')
.style("top", (d3.event.pageY - (15 * props.length)) + "px") .style('top', (d3.event.pageY - (15 * props.length)) + 'px')
.style("width", (6 * tooltipWidth) + "px") .style('width', (6 * tooltipWidth) + 'px')
.style("height", (14 * props.length) + "px"); .style('height', (14 * props.length) + 'px');
highlightOnHover(d[COLOR_ATTRIBUTE]); highlightOnHover(d[COLOR_ATTRIBUTE]);
}) })
.on("mouseout", function (d) { .on('mouseout', function (d) {
div.transition() div.transition()
.duration(500) .duration(500)
.style("opacity", 0); .style('opacity', 0);
node.attr("opacity", 1); node.attr('opacity', 1);
}) })
.on("click", function (d) { .on('click', function (d) {
console.log("click", clickedIndex); console.log('click', clickedIndex);
if (clickedIndex !== d.index) { if (clickedIndex !== d.index) {
if (springForce) { if (springForce) {
highlightNeighbours(Array.from(simulation.force(forceName).nodeNeighbours(d.index).keys())); highlightNeighbours(Array.from(simulation.force(forceName).nodeNeighbours(d.index).keys()));
clickedIndex = d.index; clickedIndex = d.index;
} }
} else { } else {
node.attr("r", NODE_SIZE).attr("stroke-width", 0); node.attr('r', NODE_SIZE).attr('stroke-width', 0);
clickedIndex = -1; clickedIndex = -1;
} }
}); });
if (selectedData) if (selectedData) { unSelectNodes(selectedData); }
unSelectNodes(selectedData);
} }
function ticked () { function ticked () {
@@ -185,10 +183,10 @@ function ticked() {
// If rendering is selected, then draw at every iteration. // If rendering is selected, then draw at every iteration.
if (rendering === true) { if (rendering === true) {
node // Each sub-circle in the SVG, update cx and cy node // Each sub-circle in the SVG, update cx and cy
.attr("cx", function (d) { .attr('cx', function (d) {
return d.x * MULTIPLIER; return d.x * MULTIPLIER;
}) })
.attr("cy", function (d) { .attr('cy', function (d) {
return d.y * MULTIPLIER; return d.y * MULTIPLIER;
}); });
} }
@@ -196,7 +194,7 @@ function ticked() {
// if (springForce) { // if (springForce) {
// intercom.emit("passedData", simulation.force(forceName).distributionData()); // intercom.emit("passedData", simulation.force(forceName).distributionData());
// } // }
if(manualStop && alreadyRanIterations == ITERATIONS) { if (manualStop && alreadyRanIterations === ITERATIONS) {
ended(); ended();
} }
} }
@@ -206,10 +204,10 @@ function ended() {
simulation.force(forceName, null); simulation.force(forceName, null);
if (rendering !== true) { // Never drawn anything before? Now it's time. if (rendering !== true) { // Never drawn anything before? Now it's time.
node node
.attr("cx", function (d) { .attr('cx', function (d) {
return d.x * MULTIPLIER; return d.x * MULTIPLIER;
}) })
.attr("cy", function (d) { .attr('cy', function (d) {
return d.y * MULTIPLIER; return d.y * MULTIPLIER;
}); });
} }
@@ -217,7 +215,7 @@ function ended() {
if (p1 !== 0) { if (p1 !== 0) {
// Performance time measurement // Performance time measurement
p2 = performance.now(); p2 = performance.now();
console.log("Execution time: " + (p2 - p1)); console.log('Execution time: ' + (p2 - p1));
p1 = 0; p1 = 0;
p2 = 0; p2 = 0;
} }
@@ -228,7 +226,6 @@ function brushEnded() {
results = []; results = [];
if (s) { if (s) {
var x0 = s[0][0] - width / 2, var x0 = s[0][0] - width / 2,
y0 = s[0][1] - height / 2, y0 = s[0][1] - height / 2,
x1 = s[1][0] - width / 2, x1 = s[1][0] - width / 2,
@@ -247,22 +244,21 @@ function brushEnded() {
// intercom.emit("select", { name: fileName, indices: results }); // intercom.emit("select", { name: fileName, indices: results });
d3.select(".brush").call(brush.move, null); d3.select('.brush').call(brush.move, null);
} }
} }
/** /**
* Format the tooltip for the data * Format the tooltip for the data
* @param {*} node * @param {*} node
*/ */
function formatTooltip (node) { function formatTooltip (node) {
var textString = "", var textString = '',
temp = ""; temp = '';
tooltipWidth = 0; tooltipWidth = 0;
props.forEach(function (element) { props.forEach(function (element) {
temp = element + ": " + node[element] + "<br/>"; temp = element + ': ' + node[element] + '<br/>';
textString += temp; textString += temp;
if (temp.length > tooltipWidth) { if (temp.length > tooltipWidth) {
tooltipWidth = temp.length; tooltipWidth = temp.length;
@@ -287,7 +283,7 @@ function stopSimulation() {
* @return {number} the mean of the array. * @return {number} the mean of the array.
*/ */
function getAverage (array) { function getAverage (array) {
console.log("getAverage", array); console.log('getAverage', array);
var total = 0; var total = 0;
for (var i = 0; i < array.length; i++) { for (var i = 0; i < array.length; i++) {
total += array[i]; total += array[i];
@@ -303,7 +299,7 @@ function unSelectNodes(data) {
selectedData = data; selectedData = data;
if (fileName === data.name && nodes) { if (fileName === data.name && nodes) {
node node
.classed("notSelected", function (d) { .classed('notSelected', function (d) {
if (data.indices.indexOf(d.index) < 0) { if (data.indices.indexOf(d.index) < 0) {
return true; return true;
} }
@@ -312,35 +308,33 @@ function unSelectNodes(data) {
} }
} }
/** /**
* Highlight the neighbours for neighbour and sampling algorithm * Highlight the neighbours for neighbour and sampling algorithm
* @param {*} indices * @param {*} indices
*/ */
function highlightNeighbours (indices) { function highlightNeighbours (indices) {
node node
.attr("r", function (d) { .attr('r', function (d) {
if (indices.indexOf(d.index) >= 0) { if (indices.indexOf(d.index) >= 0) {
return NODE_SIZE * 2; return NODE_SIZE * 2;
} }
return NODE_SIZE; return NODE_SIZE;
}) })
.attr("stroke-width", function (d) { .attr('stroke-width', function (d) {
if (indices.indexOf(d.index) >= 0) { if (indices.indexOf(d.index) >= 0) {
return NODE_SIZE * 0.2 + "px"; return NODE_SIZE * 0.2 + 'px';
} }
return "0px"; return '0px';
}) })
.attr("stroke", "white"); .attr('stroke', 'white');
} }
/** /**
* Highlight all the nodes with the same class on hover * Highlight all the nodes with the same class on hover
* @param {*} highlighValue * @param {*} highlighValue
*/ */
function highlightOnHover (highlighValue) { function highlightOnHover (highlighValue) {
node.attr("opacity", function (d) { node.attr('opacity', function (d) {
return (highlighValue === d[COLOR_ATTRIBUTE]) ? 1 : 0.3; return (highlighValue === d[COLOR_ATTRIBUTE]) ? 1 : 0.3;
}); });
} }
@@ -349,12 +343,11 @@ function highlightOnHover(highlighValue) {
* Color the nodes according to given attribute. * Color the nodes according to given attribute.
*/ */
function colorToAttribute () { function colorToAttribute () {
node.attr("fill", function (d) { node.attr('fill', function (d) {
return color(d[COLOR_ATTRIBUTE]) return color(d[COLOR_ATTRIBUTE]);
}); });
} }
/** /**
* Update the distance range. * Update the distance range.
@@ -364,7 +357,6 @@ function updateDistanceRange() {
} }
} }
/** /**
* Implemented pause/resume functionality * Implemented pause/resume functionality
*/ */
@@ -373,17 +365,16 @@ function pauseUnPause() {
if (paused) { if (paused) {
simulation.force(forceName); simulation.force(forceName);
simulation.restart(); simulation.restart();
d3.select("#pauseButton").text("Pause"); d3.select('#pauseButton').text('Pause');
paused = false; paused = false;
} else { } else {
simulation.stop(); simulation.stop();
d3.select("#pauseButton").text("Resume"); d3.select('#pauseButton').text('Resume');
paused = true; paused = true;
} }
} }
} }
/** /**
* Average distances for each node. * Average distances for each node.
* @param {*} dataNodes * @param {*} dataNodes

View File

@@ -1,17 +1,17 @@
export {default as forceNeighbourSampling} export {default as forceNeighbourSampling}
from "./src/neighbourSampling"; from './src/neighbourSampling';
export {default as forceBarnesHut} export {default as forceBarnesHut}
from "./src/barnesHut"; from './src/barnesHut';
export {default as tSNE} export {default as tSNE}
from "./src/t-sne"; from './src/t-sne';
export {default as forceLinkCompleteGraph} export {default as forceLinkCompleteGraph}
from "./src/link"; from './src/link';
export {default as hybridSimulation} export {default as hybridSimulation}
from "./src/hybridSimulation"; from './src/hybridSimulation';
export {getStress as calculateStress} export {getStress as calculateStress}
from "./src/stress"; from './src/stress';

View File

@@ -12,11 +12,19 @@
"main": "build/d3-spring-model.js", "main": "build/d3-spring-model.js",
"jsnext:main": "index", "jsnext:main": "index",
"scripts": { "scripts": {
"lintcheck": "eslint index.js src",
"lintfix": "eslint index.js src --fix",
"build": "rm -rf build && mkdir build && rollup -g d3-force:d3,d3-dispatch:d3,d3-quadtree:d3,d3-collection:d3 -f umd -n d3 -o build/d3-spring-model.js -- index.js", "build": "rm -rf build && mkdir build && rollup -g d3-force:d3,d3-dispatch:d3,d3-quadtree:d3,d3-collection:d3 -f umd -n d3 -o build/d3-spring-model.js -- index.js",
"minify": "node_modules/uglify-es/bin/uglifyjs build/d3-spring-model.js -c -m -o build/d3-spring-model.min.js", "minify": "node_modules/uglify-es/bin/uglifyjs build/d3-spring-model.js -c -m -o build/d3-spring-model.min.js",
"zip": "zip -j build/d3-spring-model.zip -- LICENSE README.md build/d3-spring-model.js build/d3-spring-model.min.js" "zip": "zip -j build/d3-spring-model.zip -- LICENSE README.md build/d3-spring-model.js build/d3-spring-model.min.js"
}, },
"devDependencies": { "devDependencies": {
"eslint": "4",
"eslint-config-standard": "^11.0.0",
"eslint-plugin-import": "^2.9.0",
"eslint-plugin-node": "^6.0.1",
"eslint-plugin-promise": "^3.7.0",
"eslint-plugin-standard": "^3.0.1",
"rollup": "0.36", "rollup": "0.36",
"uglify-js": "git+https://github.com/mishoo/UglifyJS2.git#harmony" "uglify-js": "git+https://github.com/mishoo/UglifyJS2.git#harmony"
}, },

View File

@@ -1,7 +1,7 @@
import constant from "./constant"; import constant from './constant';
import jiggle from "./jiggle"; import jiggle from './jiggle';
import {x, y} from "./xy"; import {x, y} from './xy';
import {quadtree} from "d3-quadtree"; import {quadtree} from 'd3-quadtree';
/** /**
* The refinement of the existing Barnes-Hut implementation in D3 * The refinement of the existing Barnes-Hut implementation in D3
@@ -28,7 +28,7 @@ export default function() {
function force (_) { function force (_) {
var i, n = nodes.length, tree = quadtree(nodes, x, y).visitAfter(accumulate); var i, n = nodes.length, tree = quadtree(nodes, x, y).visitAfter(accumulate);
for (alpha = _, i = 0; i < n; ++i) { for (alpha = _, i = 0; i < n; ++i) {
node = nodes[i], tree.visit(apply); node = nodes[i]; tree.visit(apply);
} }
} }
@@ -52,10 +52,7 @@ export default function() {
quad.data = children[Math.floor(Math.random() * children.length)]; quad.data = children[Math.floor(Math.random() * children.length)];
quad.x = quad.data.x; quad.x = quad.data.x;
quad.y = quad.data.y; quad.y = quad.data.y;
} } else { // For leaf nodes, accumulate forces from coincident quadrants.
// For leaf nodes, accumulate forces from coincident quadrants.
else {
q = quad; q = quad;
q.x = q.data.x; q.x = q.data.x;
q.y = q.data.y; q.y = q.data.y;
@@ -73,7 +70,6 @@ export default function() {
* @return {boolean} - true if the approximation was applied. * @return {boolean} - true if the approximation was applied.
*/ */
function apply (quad, x1, _, x2) { function apply (quad, x1, _, x2) {
var x = quad.data.x + quad.data.vx - node.x - node.vx, var x = quad.data.x + quad.data.vx - node.x - node.vx,
y = quad.data.y + quad.data.vy - node.y - node.vy, y = quad.data.y + quad.data.vy - node.y - node.vy,
w = x2 - x1, w = x2 - x1,
@@ -82,35 +78,34 @@ export default function() {
// Apply the Barnes-Hut approximation if possible. // Apply the Barnes-Hut approximation if possible.
// Limit forces for very close nodes; randomize direction if coincident. // Limit forces for very close nodes; randomize direction if coincident.
if (w / l < theta) { if (w / l < theta) {
if (x === 0) x = jiggle(), l += x * x; if (x === 0) { x = jiggle(); l += x * x; }
if (y === 0) y = jiggle(), l += y * y; if (y === 0) { y = jiggle(); l += y * y; }
if (quad.data) { if (quad.data) {
l = (l - +distance(node, quad.data)) / l * alpha; l = (l - +distance(node, quad.data)) / l * alpha;
x *= l, y *= l; x *= l; y *= l;
quad.data.vx -= x; quad.data.vx -= x;
quad.data.vy -= y; quad.data.vy -= y;
node.vx += x; node.vx += x;
node.vy += y; node.vy += y;
} }
return true; return true;
} } else if (quad.length) return; // Otherwise, process points directly.
// Otherwise, process points directly.
else if (quad.length) return;
// Limit forces for very close nodes; randomize direction if coincident. // Limit forces for very close nodes; randomize direction if coincident.
if (quad.data !== node || quad.next) { if (quad.data !== node || quad.next) {
if (x === 0) x = jiggle(), l += x * x; if (x === 0) { x = jiggle(); l += x * x; }
if (y === 0) y = jiggle(), l += y * y; if (y === 0) { y = jiggle(); l += y * y; }
} }
do if (quad.data !== node) { do {
if (quad.data !== node) {
l = (l - +distance(node, quad.data)) / l * alpha; l = (l - +distance(node, quad.data)) / l * alpha;
x *= l, y *= l; x *= l; y *= l;
quad.data.vx -= x; quad.data.vx -= x;
quad.data.vy -= y; quad.data.vy -= y;
node.vx += x; node.vx += x;
node.vy += y; node.vy += y;
}
} while (quad = quad.next); } while (quad = quad.next);
} }
@@ -125,7 +120,7 @@ export default function() {
for (var i = 0, source, target, realDist, highDist; i < nodes.length; i++) { for (var i = 0, source, target, realDist, highDist; i < nodes.length; i++) {
for (var j = 0; j < nodes.length; j++) { for (var j = 0; j < nodes.length; j++) {
if (i !== j) { if (i !== j) {
source = nodes[i], target = nodes[j]; source = nodes[i]; target = nodes[j];
realDist = Math.hypot(target.x - source.x, target.y - source.y); realDist = Math.hypot(target.x - source.x, target.y - source.y);
highDist = +distance(nodes[i], nodes[j]); highDist = +distance(nodes[i], nodes[j]);
totalDiffSq += Math.pow(realDist - highDist, 2); totalDiffSq += Math.pow(realDist - highDist, 2);
@@ -143,7 +138,7 @@ export default function() {
}; };
force.distance = function (_) { force.distance = function (_) {
return arguments.length ? (distance = typeof _ === "function" ? _ : constant(+_), force) : distance; return arguments.length ? (distance = typeof _ === 'function' ? _ : constant(+_), force) : distance;
}; };
force.theta = function (_) { force.theta = function (_) {

View File

@@ -1,8 +1,8 @@
import {dispatch} from "d3-dispatch"; import {dispatch} from 'd3-dispatch';
import constant from "./constant"; import constant from './constant';
import interpBruteForce from "./interpolation/interpBruteForce"; import interpBruteForce from './interpolation/interpBruteForce';
import interpolationPivots from "./interpolation/interpolationPivots"; import interpolationPivots from './interpolation/interpolationPivots';
import {takeSampleFrom} from "./interpolation/helpers"; import {takeSampleFrom} from './interpolation/helpers';
/** /**
* An implementation of Chalmers, Morrison, and Ross' 2002 hybrid layout * An implementation of Chalmers, Morrison, and Ross' 2002 hybrid layout
@@ -36,25 +36,25 @@ export default function (sim, forceS, forceF) {
simulation = sim, simulation = sim,
forceSample = forceS, forceSample = forceS,
forceFull = forceF, forceFull = forceF,
event = d3.dispatch("sampleTick", "fullTick", "startInterp", "end"), event = dispatch('sampleTick', 'fullTick', 'startInterp', 'end'),
initAlready = false, initAlready = false,
nodes, nodes,
alreadyRanIterations, alreadyRanIterations,
hybrid; hybrid;
if(simulation != undefined) initSimulation(); if (simulation !== undefined) initSimulation();
if(forceS != undefined || forceF != undefined) initForces(); if (forceS !== undefined || forceF !== undefined) initForces();
// Performed on first run // Performed on first run
function initialize () { function initialize () {
initAlready = true; initAlready = true;
alreadyRanIterations = 0; alreadyRanIterations = 0;
simulation simulation
.on("tick", sampleTick) .on('tick', sampleTick)
.on("end", sampleEnded) .on('end', sampleEnded)
.nodes(sample) .nodes(sample)
.force("Sample force", forceSample); .force('Sample force', forceSample);
console.log("Initialized Simulation for Hybrid"); console.log('Initialized Simulation for Hybrid');
} }
function initForces () { function initForces () {
@@ -68,19 +68,20 @@ export default function (sim, forceS, forceF) {
// Set default value for interpDistanceFn if not been specified yet // Set default value for interpDistanceFn if not been specified yet
if (interpDistanceFn === undefined) { if (interpDistanceFn === undefined) {
if(forceFull.distance == 'function') if (forceFull.distance === 'function') {
interpDistanceFn = forceFull.distance(); interpDistanceFn = forceFull.distance();
else } else {
interpDistanceFn = constant(300); interpDistanceFn = constant(300);
} }
} }
}
function initSimulation () { function initSimulation () {
nodes = simulation.nodes(); nodes = simulation.nodes();
simulation simulation
.stop() .stop()
.alphaDecay(0) .alphaDecay(0)
.alpha(1) .alpha(1);
let sets = takeSampleFrom(nodes, Math.sqrt(nodes.length)); let sets = takeSampleFrom(nodes, Math.sqrt(nodes.length));
sample = sets.sample; sample = sets.sample;
@@ -89,7 +90,7 @@ export default function (sim, forceS, forceF) {
// Sample simulation ticked 1 frame, keep track of number of iterations here. // Sample simulation ticked 1 frame, keep track of number of iterations here.
function sampleTick () { function sampleTick () {
event.call("sampleTick"); event.call('sampleTick');
if (alreadyRanIterations++ >= SAMPLE_ITERATIONS) { if (alreadyRanIterations++ >= SAMPLE_ITERATIONS) {
sampleEnded(); sampleEnded();
} }
@@ -97,7 +98,7 @@ export default function (sim, forceS, forceF) {
// Full simulation ticked 1 frame, keep track of number of iterations here. // Full simulation ticked 1 frame, keep track of number of iterations here.
function fullTick () { function fullTick () {
event.call("fullTick"); event.call('fullTick');
if (alreadyRanIterations++ >= FULL_ITERATIONS) { if (alreadyRanIterations++ >= FULL_ITERATIONS) {
fullEnded(); fullEnded();
} }
@@ -106,40 +107,40 @@ export default function (sim, forceS, forceF) {
function fullEnded () { function fullEnded () {
simulation.stop(); simulation.stop();
initAlready = false; initAlready = false;
simulation.force("Full force", null); simulation.force('Full force', null);
event.call("end"); event.call('end');
} }
function sampleEnded () { function sampleEnded () {
simulation.stop(); simulation.stop();
simulation.force("Sample force", null); simulation.force('Sample force', null);
// Reset velocity of all nodes // Reset velocity of all nodes
for (let i = sample.length - 1; i >= 0; i--) { for (let i = sample.length - 1; i >= 0; i--) {
sample[i].vx = 0; sample[i].vx = 0;
sample[i].vy = 0; sample[i].vy = 0;
} }
event.call("startInterp"); event.call('startInterp');
if (NUM_PIVOTS >= 1) { if (NUM_PIVOTS >= 1) {
interpolationPivots(sample, remainder, NUM_PIVOTS, interpDistanceFn, INTERP_FINE_ITS); interpolationPivots(sample, remainder, NUM_PIVOTS, interpDistanceFn, INTERP_FINE_ITS);
} else { } else {
interpBruteForce(sample, remainder, interpDistanceFn, INTERP_FINE_ITS); interpBruteForce(sample, remainder, interpDistanceFn, INTERP_FINE_ITS);
} }
event.call("fullTick"); event.call('fullTick');
alreadyRanIterations = 0; alreadyRanIterations = 0;
simulation simulation
.on("tick", null) .on('tick', null)
.on("end", null) // The ending condition should be iterations count .on('end', null) // The ending condition should be iterations count
.nodes(nodes); .nodes(nodes);
if (FULL_ITERATIONS < 1 || forceF === undefined || forceF === null) { if (FULL_ITERATIONS < 1 || forceF === undefined || forceF === null) {
event.call("end"); event.call('end');
return; return;
} }
simulation simulation
.on("tick", fullTick) .on('tick', fullTick)
.force("Full force", forceFull) .force('Full force', forceFull)
.restart(); .restart();
} }
@@ -184,11 +185,11 @@ export default function (sim, forceS, forceF) {
}, },
interpDistanceFn: function (_) { interpDistanceFn: function (_) {
return arguments.length ? (interpDistanceFn = typeof _ === "function" ? _ : constant(+_), hybrid) : interpDistanceFn; return arguments.length ? (interpDistanceFn = typeof _ === 'function' ? _ : constant(+_), hybrid) : interpDistanceFn;
}, },
simulation: function (_) { simulation: function (_) {
return arguments.length ? (toInit = true, simulation = _, hybrid) : simulation; return arguments.length ? (initAlready = false, simulation = _, hybrid) : simulation;
}, },
forceSample: function (_) { forceSample: function (_) {
@@ -197,7 +198,7 @@ export default function (sim, forceS, forceF) {
forceFull: function (_) { forceFull: function (_) {
return arguments.length ? (forceFull = _, initForces(), hybrid) : forceFull; return arguments.length ? (forceFull = _, initForces(), hybrid) : forceFull;
}, }
}; };
} }

View File

@@ -24,10 +24,10 @@ export function takeSampleFrom(sourceList, amount) {
} }
for (let i = 0; i < amount; ++i) { for (let i = 0; i < amount; ++i) {
let rand = sourceList[Math.floor((Math.random() * max))]; let rand = sourceList[Math.floor(Math.random() * max)];
// Re-random until suitable value is found. // Re-random until suitable value is found.
while (randElements.includes(rand)) { while (randElements.includes(rand)) {
rand = sourceList[Math.floor((Math.random() * max))]; rand = sourceList[Math.floor(Math.random() * max)];
} }
randElements.push(rand); randElements.push(rand);
} }
@@ -40,8 +40,7 @@ export function takeSampleFrom(sourceList, amount) {
sample: remainder, sample: remainder,
remainder: randElements remainder: randElements
}; };
} } else {
else {
return { return {
sample: randElements, sample: randElements,
remainder: remainder remainder: remainder

View File

@@ -1,5 +1,5 @@
import {takeSampleFrom} from "./helpers"; import {takeSampleFrom} from './helpers';
import {placeNearToNearestNeighbour} from "./interpCommon"; import {placeNearToNearestNeighbour} from './interpCommon';
/** /**
* Perform interpolation where the "parent" node is found by brute-force. * Perform interpolation where the "parent" node is found by brute-force.
@@ -39,8 +39,7 @@ export default function(sampleSet, remainderSet, distanceFn, endingIts) {
} }
index = sampleSubset.indexOf(sample); index = sampleSubset.indexOf(sample);
if (index !== -1) if (index !== -1) { sampleSubsetDistanceCache[index] = dist; }
sampleSubsetDistanceCache[index] = dist;
} }
placeNearToNearestNeighbour(node, nearestSample, minDist, sampleSubset, sampleSubsetDistanceCache, endingIts); placeNearToNearestNeighbour(node, nearestSample, minDist, sampleSubset, sampleSubsetDistanceCache, endingIts);

View File

@@ -1,5 +1,5 @@
import {pointOnCircle, sumDistError} from "./helpers"; import {pointOnCircle, sumDistError} from './helpers';
import jiggle from "../jiggle"; import jiggle from '../jiggle';
/** /**
* Phase 2 and 3 of each node to be interpolated. * Phase 2 and 3 of each node to be interpolated.
@@ -37,16 +37,10 @@ export function placeNearToNearestNeighbour(node, nearNeighbour, radius, sampleS
highBound = 0.0; highBound = 0.0;
// Determine the closest quadrant // Determine the closest quadrant
if (dist0 == dist180) { if (dist0 === dist180) {
if (dist90 > dist270) if (dist90 > dist270) { lowBound = highBound = 270; } else { lowBound = highBound = 90; }
lowBound = highBound = 270; } else if (dist90 === dist270) {
else if (dist0 > dist180) { lowBound = highBound = 180; } else { lowBound = highBound = 0; }
lowBound = highBound = 90;
} else if (dist90 == dist270) {
if (dist0 > dist180)
lowBound = highBound = 180;
else
lowBound = highBound = 0;
} else if (dist0 > dist180) { } else if (dist0 > dist180) {
if (dist90 > dist270) { if (dist90 > dist270) {
lowBound = 180; lowBound = 180;
@@ -55,15 +49,13 @@ export function placeNearToNearestNeighbour(node, nearNeighbour, radius, sampleS
lowBound = 90; lowBound = 90;
highBound = 180; highBound = 180;
} }
} else { } else if (dist90 > dist270) {
if (dist90 > dist270) {
lowBound = 270; lowBound = 270;
highBound = 360; highBound = 360;
} else { } else {
lowBound = 0; lowBound = 0;
highBound = 90; highBound = 90;
} }
}
// Determine the angle // Determine the angle
let angle = binarySearchMin(lowBound, highBound, sumDistErrorByAngle); let angle = binarySearchMin(lowBound, highBound, sumDistErrorByAngle);
@@ -95,7 +87,7 @@ function sumForcesToSample(node, samples, sampleCache) {
y = node.y - sample.y || jiggle(); y = node.y - sample.y || jiggle();
l = Math.sqrt(x * x + y * y); l = Math.sqrt(x * x + y * y);
l = (l - sampleCache[i]) / l; l = (l - sampleCache[i]) / l;
x *= l, y *= l; x *= l; y *= l;
nodeVx -= x; nodeVx -= x;
nodeVy -= y; nodeVy -= y;
} }
@@ -114,7 +106,7 @@ function binarySearchMin(lb, hb, fn) {
while (lb <= hb) { while (lb <= hb) {
if (lb === hb) return lb; if (lb === hb) return lb;
if(hb-lb == 1) { if (hb - lb === 1) {
if (fn(lb) >= fn(hb)) return hb; if (fn(lb) >= fn(hb)) return hb;
else return lb; else return lb;
} }
@@ -124,11 +116,11 @@ function binarySearchMin(lb, hb, fn) {
valLowerHalf = fn(lb + range / 4), valLowerHalf = fn(lb + range / 4),
valHigherHalf = fn(lb + range * 3 / 4); valHigherHalf = fn(lb + range * 3 / 4);
if (valLowerHalf > valHigherHalf) if (valLowerHalf > valHigherHalf) {
lb = Math.floor((lb + hb) / 2); lb = Math.floor((lb + hb) / 2);
else if (valLowerHalf < valHigherHalf) } else if (valLowerHalf < valHigherHalf) {
hb = Math.ceil((lb + hb) / 2); hb = Math.ceil((lb + hb) / 2);
else { } else {
lb += Math.floor(range / 4); lb += Math.floor(range / 4);
hb -= Math.ceil(range / 4); hb -= Math.ceil(range / 4);
} }

View File

@@ -1,5 +1,5 @@
import {takeSampleFrom} from "./helpers"; import {takeSampleFrom} from './helpers';
import {placeNearToNearestNeighbour} from "./interpCommon"; import {placeNearToNearestNeighbour} from './interpCommon';
/** /**
* Perform interpolation where the "parent" node is is estimated by pivot-based searching. * Perform interpolation where the "parent" node is is estimated by pivot-based searching.
@@ -44,8 +44,9 @@ export default function(sampleSet, remainderSet, numPivots, distanceFn, endingIt
let distCache = []; // [ For each non-pivot sample:[For each Pivot: distance] ] let distCache = []; // [ For each non-pivot sample:[For each Pivot: distance] ]
let bucketWidths = []; // [ For each Pivot: width of each bucket ] let bucketWidths = []; // [ For each Pivot: width of each bucket ]
for (let i = 0; i < nonPivotSamples.length; i++) for (let i = 0; i < nonPivotSamples.length; i++) {
distCache[i] = []; distCache[i] = [];
}
for (let j = 0; j < numPivots; j++) { for (let j = 0; j < numPivots; j++) {
let pivot = pivots[j]; let pivot = pivots[j];
@@ -54,9 +55,10 @@ export default function(sampleSet, remainderSet, numPivots, distanceFn, endingIt
for (let i = 0; i < numNonPivots; i++) { for (let i = 0; i < numNonPivots; i++) {
let sample = nonPivotSamples[i]; let sample = nonPivotSamples[i];
distCache[i][j] = distanceFn(pivot, sample); distCache[i][j] = distanceFn(pivot, sample);
if (distCache[i][j] > maxDist) if (distCache[i][j] > maxDist) {
maxDist = distCache[i][j]; maxDist = distCache[i][j];
} }
}
bucketWidths.push(maxDist / numBuckets); bucketWidths.push(maxDist / numBuckets);
} }
@@ -77,7 +79,6 @@ export default function(sampleSet, remainderSet, numPivots, distanceFn, endingIt
} }
// --------------------------------------------------------------------- // ---------------------------------------------------------------------
let sampleSubset = takeSampleFrom(sampleSet, Math.sqrt(sampleSet.length)).sample; let sampleSubset = takeSampleFrom(sampleSet, Math.sqrt(sampleSet.length)).sample;
// Plot each of the remainder nodes // Plot each of the remainder nodes
for (let i = remainderSet.length - 1; i >= 0; i--) { for (let i = remainderSet.length - 1; i >= 0; i--) {
@@ -110,12 +111,11 @@ export default function(sampleSet, remainderSet, numPivots, distanceFn, endingIt
for (let j = pivotsBuckets[p][bucketNumber].length - 1; j >= 0; j--) { for (let j = pivotsBuckets[p][bucketNumber].length - 1; j >= 0; j--) {
let candidateNode = pivotsBuckets[p][bucketNumber][j]; let candidateNode = pivotsBuckets[p][bucketNumber][j];
let index = sampleSubset.indexOf(candidateNode); let index = sampleSubset.indexOf(candidateNode);
if (index !== -1 && sampleSubsetDistanceCache[index] !== undefined) if (index !== -1 && sampleSubsetDistanceCache[index] !== undefined) {
dist = sampleSubsetDistanceCache[index] dist = sampleSubsetDistanceCache[index];
else { } else {
dist = distanceFn(candidateNode, node); dist = distanceFn(candidateNode, node);
if (index !== -1) if (index !== -1) { sampleSubsetDistanceCache[index] = dist; }
sampleSubsetDistanceCache[index] = dist;
} }
if (dist < minDist) { if (dist < minDist) {
@@ -127,9 +127,10 @@ export default function(sampleSet, remainderSet, numPivots, distanceFn, endingIt
// Fill in holes in cache // Fill in holes in cache
for (let k = 0; k < sampleSubset.length; k++) { for (let k = 0; k < sampleSubset.length; k++) {
if (sampleSubsetDistanceCache[k] === undefined) if (sampleSubsetDistanceCache[k] === undefined) {
sampleSubsetDistanceCache[k] = distanceFn(node, sampleSubset[k]); sampleSubsetDistanceCache[k] = distanceFn(node, sampleSubset[k]);
} }
}
placeNearToNearestNeighbour(node, nearSample, minDist, sampleSubset, sampleSubsetDistanceCache, endingIts); placeNearToNearestNeighbour(node, nearSample, minDist, sampleSubset, sampleSubsetDistanceCache, endingIts);
} }
} }

View File

@@ -1,5 +1,5 @@
import constant from "./constant"; import constant from './constant';
import jiggle from "./jiggle"; import jiggle from './jiggle';
/** /**
* Modified link force algorithm * Modified link force algorithm
@@ -32,7 +32,8 @@ export default function() {
// Each iteration in a tick // Each iteration in a tick
for (var k = 0, source, target, i, j, x, y, l; k < iterations; ++k) { for (var k = 0, source, target, i, j, x, y, l; k < iterations; ++k) {
// For each link // For each link
for (i = 1; i < n; i++) for (j = 0; j < i; j++) { for (i = 1; i < n; i++) {
for (j = 0; j < i; j++) {
// jiggle so l won't be zero and divide by zero error after this // jiggle so l won't be zero and divide by zero error after this
source = nodes[i]; source = nodes[i];
target = nodes[j]; target = nodes[j];
@@ -40,13 +41,14 @@ export default function() {
y = target.y + target.vy - source.y - source.vy || jiggle(); y = target.y + target.vy - source.y - source.vy || jiggle();
l = Math.sqrt(x * x + y * y); l = Math.sqrt(x * x + y * y);
l = (l - distances[i * (i - 1) / 2 + j]) / l * dataSizeFactor * alpha; l = (l - distances[i * (i - 1) / 2 + j]) / l * dataSizeFactor * alpha;
x *= l, y *= l; x *= l; y *= l;
target.vx -= x; target.vx -= x;
target.vy -= y; target.vy -= y;
source.vx += x; source.vx += x;
source.vy += y; source.vy += y;
} }
} }
}
// Calculate velocity changes, aka force applied. // Calculate velocity changes, aka force applied.
if (stableVeloHandler !== null && stableVelocity >= 0) { if (stableVeloHandler !== null && stableVelocity >= 0) {
@@ -90,7 +92,7 @@ export default function() {
}; };
force.distance = function (_) { force.distance = function (_) {
return arguments.length ? (distance = typeof _ === "function" ? _ : constant(+_), initializeDistance(), force) : distance; return arguments.length ? (distance = typeof _ === 'function' ? _ : constant(+_), initializeDistance(), force) : distance;
}; };
force.latestAccel = function () { force.latestAccel = function () {

View File

@@ -1,5 +1,5 @@
import constant from "./constant"; import constant from './constant';
import jiggle from "./jiggle"; import jiggle from './jiggle';
/** /**
* An implementation of Chalmers' 1996 Neighbour and Sampling algorithm. * An implementation of Chalmers' 1996 Neighbour and Sampling algorithm.
* It uses random sampling to find the most suited neighbours from the * It uses random sampling to find the most suited neighbours from the
@@ -81,7 +81,7 @@ export default function () {
y = target.y + target.vy - source.y - source.vy || jiggle(); y = target.y + target.vy - source.y - source.vy || jiggle();
l = Math.sqrt(x * x + y * y); l = Math.sqrt(x * x + y * y);
l = (l - dist) / l * dataSizeFactor * alpha; l = (l - dist) / l * dataSizeFactor * alpha;
x *= l, y *= l; x *= l; y *= l;
// Set the calculated velocites for both nodes. // Set the calculated velocites for both nodes.
target.vx -= x; target.vx -= x;
target.vy -= y; target.vy -= y;
@@ -126,10 +126,10 @@ export default function () {
break; break;
} }
let rand = Math.floor((Math.random() * max)); let rand = Math.floor(Math.random() * max);
// Re-random until suitable value is found. // Re-random until suitable value is found.
while (randElements.includes(rand) || exclude.includes(rand)) { while (randElements.includes(rand) || exclude.includes(rand)) {
rand = Math.floor((Math.random() * max)); rand = Math.floor(Math.random() * max);
} }
randElements.push(rand); randElements.push(rand);
} }
@@ -166,7 +166,6 @@ export default function () {
return new Map(combined.slice(0, neighbourSize)); return new Map(combined.slice(0, neighbourSize));
} }
// API for initializing the algorithm and setting parameters // API for initializing the algorithm and setting parameters
force.initialize = function (_) { force.initialize = function (_) {
nodes = _; nodes = _;
@@ -186,7 +185,7 @@ export default function () {
}; };
force.distance = function (_) { force.distance = function (_) {
return arguments.length ? (distance = typeof _ === "function" ? _ : constant(+_), force) : distance; return arguments.length ? (distance = typeof _ === 'function' ? _ : constant(+_), force) : distance;
}; };
force.latestAccel = function () { force.latestAccel = function () {

View File

@@ -5,11 +5,12 @@
* @return {number} - stress of the layout. * @return {number} - stress of the layout.
*/ */
export function getStress (nodes, distance) { export function getStress (nodes, distance) {
let sumDiffSq = 0 let sumDiffSq = 0;
let sumLowDDistSq = 0; let sumLowDDistSq = 0;
for (let j = nodes.length - 1; j >= 1; j--) { for (let j = nodes.length - 1; j >= 1; j--) {
for (let i = 0; i < j; i++) { for (let i = 0; i < j; i++) {
let source = nodes[i], target = nodes[j]; let source = nodes[i];
let target = nodes[j];
let lowDDist = Math.hypot(target.x - source.x, target.y - source.y); let lowDDist = Math.hypot(target.x - source.x, target.y - source.y);
let highDDist = distance(source, target); let highDDist = distance(source, target);
sumDiffSq += Math.pow(highDDist - lowDDist, 2); sumDiffSq += Math.pow(highDDist - lowDDist, 2);

View File

@@ -1,4 +1,5 @@
import constant from "./constant"; /* eslint-disable block-scoped-var */
import constant from './constant';
/** /**
* Set the node id accessor to the specified i. * Set the node id accessor to the specified i.
@@ -52,7 +53,9 @@ export default function() {
let u = 2 * Math.random() - 1; let u = 2 * Math.random() - 1;
let v = 2 * Math.random() - 1; let v = 2 * Math.random() - 1;
let r = u * u + v * v; let r = u * u + v * v;
if (r == 0 || r > 1) return gaussRandom(); if (r === 0 || r > 1) {
return gaussRandom();
}
return u * Math.sqrt(-2 * Math.log(r) / r); return u * Math.sqrt(-2 * Math.log(r) / r);
} }
@@ -74,7 +77,7 @@ export default function() {
* @return {Float64Array} - array of zeros with length n. * @return {Float64Array} - array of zeros with length n.
*/ */
function zeros (n) { function zeros (n) {
if (typeof(n) === 'undefined' || isNaN(n)) { if (typeof n === 'undefined' || isNaN(n)) {
return []; return [];
} }
return new Float64Array(n); // typed arrays are faster return new Float64Array(n); // typed arrays are faster
@@ -137,7 +140,7 @@ export default function() {
// Normalize p and compute entropy. // Normalize p and compute entropy.
var Hhere = 0.0; var Hhere = 0.0;
for (j = 0; j < N; j++) { for (j = 0; j < N; j++) {
if (psum == 0) { if (psum === 0) {
pj = 0; pj = 0;
} else { } else {
pj = prow[j] / psum; pj = prow[j] / psum;
@@ -158,7 +161,6 @@ export default function() {
} else { } else {
beta = (beta + betamax) / 2; beta = (beta + betamax) / 2;
} }
} else { } else {
// Converse case. Make distrubtion less peaky. // Converse case. Make distrubtion less peaky.
betamax = beta; betamax = beta;
@@ -180,7 +182,6 @@ export default function() {
for (j = 0; j < N; j++) { for (j = 0; j < N; j++) {
P1[i * N + j] = prow[j]; P1[i * N + j] = prow[j];
} }
} }
// Symmetrize P and normalize it to sum to 1 over all ij // Symmetrize P and normalize it to sum to 1 over all ij
@@ -267,7 +268,6 @@ export default function() {
* @return {object} that contains a cost and a gradient. * @return {object} that contains a cost and a gradient.
*/ */
function costGrad (Y) { function costGrad (Y) {
var pmul = iteration < 100 ? 4 : 1; var pmul = iteration < 100 ? 4 : 1;
// Compute current Q distribution, unnormalized first. // Compute current Q distribution, unnormalized first.
@@ -329,7 +329,7 @@ export default function() {
for (var i = 0, source, target, realDist, highDist; i < nodes.length; i++) { for (var i = 0, source, target, realDist, highDist; i < nodes.length; i++) {
for (var j = 0; j < nodes.length; j++) { for (var j = 0; j < nodes.length; j++) {
if (i !== j) { if (i !== j) {
source = nodes[i], target = nodes[j]; source = nodes[i]; target = nodes[j];
realDist = Math.hypot(target.x - source.x, target.y - source.y); realDist = Math.hypot(target.x - source.x, target.y - source.y);
highDist = +distance(nodes[i], nodes[j]); highDist = +distance(nodes[i], nodes[j]);
totalDiffSq += Math.pow(realDist - highDist, 2); totalDiffSq += Math.pow(realDist - highDist, 2);
@@ -355,7 +355,7 @@ export default function() {
}; };
force.distance = function (_) { force.distance = function (_) {
return arguments.length ? (distance = typeof _ === "function" ? _ : constant(+_), force) : distance; return arguments.length ? (distance = typeof _ === 'function' ? _ : constant(+_), force) : distance;
}; };
force.stress = function () { force.stress = function () {