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@@ -1,9 +1,20 @@
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import {pointOnCircle, takeSampleFrom} from "./helpers";
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import {pointOnCircle, takeSampleFrom} from "./helpers";
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import {placeNearToNearestNeighbour} from "./interpCommon";
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import {placeNearToNearestNeighbour} from "./interpCommon";
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/**
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* Perform interpolation where the nearest neighbour is found by brute-force.
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* For each point to be interpolated:
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* - Phase 1: find a nearest beighbour by comparing high-d distance against
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each point already in the graph.
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* - Phase 2 and 3 are passed onto placeNearToNearestNeighbour
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* @param {list} sampleSet - nodes already plotted on the 2D graph
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* @param {list} remainderSet - nodes to be interpolated onto the graph
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* @param {function} distanceFn - f(nodex, nodey) that calculate high-dimensional
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* distance between 2 nodes
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* @param {number} endingIts - for phase 3, how many iterations to refine the
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* placement of each interpolated point
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*/
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export default function(sampleSet, remainderSet, distanceFn) {
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export default function(sampleSet, remainderSet, distanceFn) {
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// var distance = calculateEuclideanDistance;
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// console.log("Brute-force");
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let sampleSubset = takeSampleFrom(sampleSet, Math.sqrt(sampleSet.length)).sample;
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let sampleSubset = takeSampleFrom(sampleSet, Math.sqrt(sampleSet.length)).sample;
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for (let node of remainderSet) {
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for (let node of remainderSet) {
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@@ -1,6 +1,27 @@
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import {pointOnCircle, takeSampleFrom} from "./helpers";
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import {pointOnCircle, takeSampleFrom} from "./helpers";
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import {placeNearToNearestNeighbour} from "./interpCommon";
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import {placeNearToNearestNeighbour} from "./interpCommon";
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/**
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* Perform interpolation where the near neighbour is estimated by pivot-based searching.
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* - Pre-processing: assign random samples as pivots,
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* put the others in each pivot's bucket.
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* ie. non-pivot sample X may be in
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* - bucket 3 of pivot A,
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* - bucket 1 of pivot B,
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* - bucket 5 of pivot C,
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* all at the same time
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* For each point to be interpolated:
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* - Phase 1: for each pivot: compare distance against the pivot
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* compare against other points in the same bucket of that pivot
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* note down the nearest neighbour found
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* - Phase 2 and 3 are passed onto placeNearToNearestNeighbour
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* @param {list} sampleSet - nodes already plotted on the 2D graph
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* @param {list} remainderSet - nodes to be interpolated onto the graph
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* @param {function} distanceFn - f(nodex, nodey) that calculate high-dimensional
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* distance between 2 nodes
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* @param {number} endingIts - for phase 3, how many iterations to refine the
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* placement of each interpolated point
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*/
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export default function(sampleSet, remainderSet, numPivots, distanceFn) {
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export default function(sampleSet, remainderSet, numPivots, distanceFn) {
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// Pivot based parent finding
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// Pivot based parent finding
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let numBuckets = Math.floor(Math.sqrt(sampleSet.length));
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let numBuckets = Math.floor(Math.sqrt(sampleSet.length));
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@@ -18,7 +39,7 @@ export default function(sampleSet, remainderSet, numPivots, distanceFn) {
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// Pre-calculate distance between each non-pivot sample to each pivot
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// Pre-calculate distance between each non-pivot sample to each pivot
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// At the same time, determine the bucket width for each pivot based on furthest non-pivot sample
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// At the same time, determine the bucket width for each pivot based on furthest non-pivot sample
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let distCache = []; // [ For each non-pivot Sample:[For each Pivot: distance] ]
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let distCache = []; // [ For each non-pivot sample:[For each Pivot: distance] ]
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let bucketWidths = []; // [ For each Pivot: width of each bucket ]
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let bucketWidths = []; // [ For each Pivot: width of each bucket ]
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for (let i = 0; i < nonPivotSamples.length; i++)
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for (let i = 0; i < nonPivotSamples.length; i++)
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@@ -37,7 +58,6 @@ export default function(sampleSet, remainderSet, numPivots, distanceFn) {
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bucketWidths.push(maxDist / numBuckets);
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bucketWidths.push(maxDist / numBuckets);
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}
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}
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// ---------------------------------------------------------------------
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// Put samples (pivot not included) into buckets
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// Put samples (pivot not included) into buckets
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for (let j = 0; j < numPivots; j++) {
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for (let j = 0; j < numPivots; j++) {
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@@ -53,6 +73,7 @@ export default function(sampleSet, remainderSet, numPivots, distanceFn) {
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pivotsBuckets[j][bucketNumber].push(sample);
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pivotsBuckets[j][bucketNumber].push(sample);
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}
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}
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}
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}
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// ---------------------------------------------------------------------
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let sampleSubset = takeSampleFrom(sampleSet, Math.sqrt(sampleSet.length)).sample;
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let sampleSubset = takeSampleFrom(sampleSet, Math.sqrt(sampleSet.length)).sample;
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